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Preprints, Working Papers, ... Year : 2024

Svetlana: a Supervised Segmentation Classifier for Napari

Abstract

We present Svetlana (SuperVised sEgmenTation cLAssifier for NapAri), an open-source Napari plugin dedicated to the manual or automatic classification of segmentation results. A few recent software have made it possible to automatically segment complex 2D and 3D objects such as cells in biology with unrivaled performance. However, the subsequent analysis of the results is oftentimes inaccessible to non-specialists. The Svetlana plugin aims at going one step further, by allowing end-users to label the segmented objects and to pick, train and run arbitrary neural network classifiers. The resulting network can then be used for the quantitative analysis of biophysical phenoma. We showcase its performance through challenging problems in 2D and 3D. Comparisons with random forest classifiers, which are the only easily available alternative to date, show significant advantages for the proposed approach.
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Dates and versions

hal-03927879 , version 1 (06-01-2023)
hal-03927879 , version 2 (29-02-2024)

Identifiers

  • HAL Id : hal-03927879 , version 2

Cite

Clément Cazorla, Renaud Morin, Pierre Weiss. Svetlana: a Supervised Segmentation Classifier for Napari. 2024. ⟨hal-03927879v2⟩
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